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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49961519_49962508_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
49961519 - 49962508
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGCA
5'SS Class:
major
3'SS Sequence:
CATGACGTCATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTACTT
Flanking Amino Acid:
HQRTHSIDHDRPMNTLMLKG
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
67.7
37.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
57.8
0.18
1
49.7
38.7
Minor 5ss
44.6
-0.6
2.9
59.3
45.3
Minor BPS
65
0.55
1.5
80
36.6

Associated Gene:

Gene:
BBS7
Ensembl Gene ID:
ENSAPLG00000005255
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005472
49957492 - 49975827
18336