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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49964848_49965906_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49964848 - 49965906
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATTATCT
Flanking Amino Acid:
VVSFSSCDSEPNSNFLLATY
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
74.9
0.56
1
68.1
42.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
56
0.27
2
80.47
41.5

Associated Gene:

Gene:
BBS7
Ensembl Gene ID:
ENSAPLG00000005255
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005472
49957492 - 49975827
18336