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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49967644_49967761_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49967644 - 49967761
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTTTTGAAAA
Flanking Amino Acid:
QEMQSKISSLRNELEHLQMK
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.4
0.68
0.8
73.3
36.8
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
60.7
0.33
1.5
71.57
33.8

Associated Gene:

Gene:
BBS7
Ensembl Gene ID:
ENSAPLG00000005255
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005472
49957492 - 49975827
18336