Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49970350_49971620_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49970350 - 49971620

Intron Length:

1271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTCCATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

TCCTTTTCCATT

Flanking Amino Acid:

WEIGNEKKRGGILCIDSFDI

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

Major BPS

0.3

62.3

30.4

Major PPT

74.5

0.55

0.8

74.8

Minor 5ss

53.1

0.1

2.3

69.7

41.2

Minor BPS

46.1

-0.2

1.9

62.38

43.1

Associated Gene:

Gene:

BBS7

Ensembl Gene ID:

ENSAPLG00000005255

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005472

49957492 - 49975827

18336