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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49973316_49973942_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49973316 - 49973942
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAAAATA
5'SS Class:
major
3'SS Sequence:
TTCTCGTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTACTTATTC
Flanking Amino Acid:
CQDRLLRVLQGSDLLYEVEV
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
75.3
34.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79.2
0.66
0.8
77.4
31.4
Minor 5ss
32.8
-2
2.9
41
44.9
Minor BPS
66.5
0.5
1.8
79.36
36

Associated Gene:

Gene:
BBS7
Ensembl Gene ID:
ENSAPLG00000005255
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005472
49957492 - 49975827
18336