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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49975548_49975625_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49975548 - 49975625
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TCTGCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
TGAGGTGTAACG
Flanking Amino Acid:
PASGRAATQKVVVGDQDGVV
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
74.8
0.56
0.9
65.4
41.1
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
41.7
-0.7
2.4
48.14
45.5

Associated Gene:

Gene:
BBS7
Ensembl Gene ID:
ENSAPLG00000005255
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005472
49957492 - 49975827
18336