Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49975692_49975791_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49975692 - 49975791

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCCG

5'SS Class:

major

3'SS Sequence:

GCTGTGTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGGTGAG

U12 Branch Point Sequence:

TGAGCGAGAGCC

Flanking Amino Acid:

LSLARVDYLQVGVTAQKTMR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

1.1

57.9

46.7

Major BPS

43.4

-0.4

1.6

34.6

43.7

Major PPT

75.8

0.58

68.6

42.1

Minor 5ss

29.7

-2.3

3.4

38.8

46.5

Minor BPS

35.4

-1.1

2.3

46.13

Associated Gene:

Gene:

BBS7

Ensembl Gene ID:

ENSAPLG00000005255

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005472

49957492 - 49975827

18336