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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49976834_49978296_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49976834 - 49978296
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TCTTTTTCTACT
Flanking Amino Acid:
VDRENDEVNEGELKEIKQDI
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
34.3
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
87.1
0.84
0.7
82.3
27.9
Minor 5ss
36.6
-1.5
3.3
49.2
47.3
Minor BPS
53.7
0.2
1.9
75.28
41.8

Associated Gene:

Gene:
TRPC3
Ensembl Gene ID:
ENSAPLG00000005541
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005749
49976691 - 50016835
40145