Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49983938_49985554_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49983938 - 49985554

Intron Length:

1617

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGCATG

5'SS Class:

major

3'SS Sequence:

TTTTTTTCCTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

GTAGTAGTAATA

Flanking Amino Acid:

LGAKLNPAFTTVEESFKTLF

Intron Amino Acid Position:

697

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.3

72.7

44.5

Major BPS

0.75

78.6

Major PPT

88.3

0.86

0.6

89.2

19.7

Minor 5ss

44.4

-0.6

2.8

40.8

Minor BPS

42.6

-0.5

2.2

53.33

39.2

Associated Gene:

Gene:

TRPC3

Ensembl Gene ID:

ENSAPLG00000005541

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022084

49977295 - 50016835

39541

ENSAPLT00000005749

49976691 - 50016835

40145