Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49991183_49997856_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49991183 - 49997856

Intron Length:

6674

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TTTTCTTTCTTT

Flanking Amino Acid:

KLAIKYEVKKFVAHPNCQQQ

Intron Amino Acid Position:

404

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

25.6

Major BPS

78.2

0.7

77.9

32.1

Major PPT

1.03

0.5

92.7

17.1

Minor 5ss

35.3

-1.7

3.2

50.4

Minor BPS

46.2

-0.2

3.6

83.14

Associated Gene:

Gene:

TRPC3

Ensembl Gene ID:

ENSAPLG00000005541

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022084

49977295 - 50016835

39541

ENSAPLT00000005749

49976691 - 50016835

40145