About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5005325_5024018_F

Intron Information:

Intron Rank:
143671
Intron Class:
major
Intron Phase:
Intron Coordinates:
5005325 - 5024018
Intron Length:
18694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
TGCTGTGTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
62
0.27
1
54.9
44.7
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
39.6
-0.7
2.4
50.58
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027412
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047788
5002177 - 5048697
46521