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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_500795_502257_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
500795 - 502257
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATCACTT
Flanking Amino Acid:
REQIEKSRDGYVDISLLVSF
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
86.1
24.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.4
0.73
0.6
81.9
23
Minor 5ss
46.2
-0.4
2.8
62.8
42
Minor BPS
50
0.08
2
75.99
40.7

Associated Gene:

Gene:
LARP7
Ensembl Gene ID:
ENSAPLG00000012887
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013441
499617 - 522923
23307