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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50101764_50102445_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50101764 - 50102445
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGACTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GGATTATTAATA
Flanking Amino Acid:
RGMQLTGSTSNTPYTPLDKK
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71
0.47
1
69.8
41.4
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
56.7
0.21
1.6
62.9
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022216
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033962
50096523 - 50113846
17324