Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50102620_50102947_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

50102620 - 50102947

Intron Length:

328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTCTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTTAA

U12 Branch Point Sequence:

TTCCCTCTCACA

Flanking Amino Acid:

LTPLVAEALDRYIEAMVHCA

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

88.9

24.6

Major BPS

63.3

0.33

1.1

55.4

41.7

Major PPT

80.9

0.69

0.7

75.6

26.6

Minor 5ss

37.5

-1.4

2.8

51.2

45.3

Minor BPS

48.2

-0.1

2.1

65.11

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033962

50096523 - 50113846

17324