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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50103069_50103620_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50103069 - 50103620
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TTTCCCCTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
ATATTATTAAGT
Flanking Amino Acid:
QNSKTSFSENLSSKQDIRGT
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.6
39.7
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
70
0.45
1
68.1
32.4
Minor 5ss
34
-1.8
3.2
44.2
43.7
Minor BPS
57.3
0.31
1.9
76.16
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022216
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033962
50096523 - 50113846
17324