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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50103768_50104136_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50103768 - 50104136
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTCTTTACTC
Flanking Amino Acid:
GLQANVSVPKVNLCLLQASV
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.3
0.62
0.9
71
38.6
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
68.3
0.55
1.5
76.18
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022216
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033962
50096523 - 50113846
17324