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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50104265_50104713_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
50104265 - 50104713
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CATGGGTTCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
ATTTGCTTAATT
Flanking Amino Acid:
DRIATQVRMNRGIVEESSNN
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
53.5
0.08
1.1
51
41.7
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
75.6
0.88
1.7
90.25
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022216
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033962
50096523 - 50113846
17324