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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50108377_50109161_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50108377 - 50109161
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCAATT
Flanking Amino Acid:
NVRSPAHVFSRQLNLLSTAT
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.7
0.49
1
72.4
37.7
Minor 5ss
42.6
-0.8
3.1
59.4
45.3
Minor BPS
63.4
0.5
1.8
85.14
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022216
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033962
50096523 - 50113846
17324