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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50110558_50111846_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50110558 - 50111846
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTGTTCATT
Flanking Amino Acid:
NYSIIEDATMSDGLPALVTL
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.9
0.63
1
82.6
32.7
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
53.5
0.19
2.4
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022216
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033962
50096523 - 50113846
17324