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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50112088_50113685_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50112088 - 50113685
Intron Length:
1598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCAG
5'SS Class:
major
3'SS Sequence:
TGCTTGCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATATATCCAAAT
Flanking Amino Acid:
ADGAEFEFDAATVSEHTMLL
Intron Amino Acid Position:
810

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
55
43.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.5
0.64
0.9
69.2
41.8
Minor 5ss
36.3
-1.6
3.2
46.8
48.6
Minor BPS
43.4
-0.4
2
63.17
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022216
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033962
50096523 - 50113846
17324