About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50154809_50155084_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50154809 - 50155084
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
MNMSNVMGNTTWTTSGLKSQ
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
87.1
30
Major BPS
100
1.24
0.5
100
0
Major PPT
74.8
0.56
1
66.3
44.6
Minor 5ss
40.7
-1
2.8
50.6
39.2
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028504
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034891
50153857 - 50158833
4977