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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50165806_50167248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50165806 - 50167248
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTT
5'SS Class:
major
3'SS Sequence:
GTTTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTATTTAAAT
Flanking Amino Acid:
GFAQKMAQNQEPLLSKPPCI
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.5
36.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.8
78.1
40.1
Minor 5ss
48.1
-0.2
3.2
72.7
44.5
Minor BPS
66.4
0.59
1.6
82.06
39.2

Associated Gene:

Gene:
ADAD1
Ensembl Gene ID:
ENSAPLG00000006694
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006952
50165616 - 50177202
11587