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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50172424_50173507_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50172424 - 50173507
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGTCTTACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATGTCTTACTT
Flanking Amino Acid:
PKGSAQLKSQLHLNPQSVSA
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
100
1.24
0.5
100
0
Major PPT
81.1
0.7
0.8
78.4
34.8
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
52.8
0.17
1.7
67.77
43.9

Associated Gene:

Gene:
ADAD1
Ensembl Gene ID:
ENSAPLG00000006694
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006952
50165616 - 50177202
11587