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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50175585_50176075_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50175585 - 50176075
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGAATT
5'SS Class:
major
3'SS Sequence:
ATTCTGACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTGTCATTC
Flanking Amino Acid:
VDGLNGKTTERSPFKSGTYM
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.3
75.8
40
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
74.3
0.55
0.9
67.2
38.5
Minor 5ss
35.3
-1.7
3.1
51.4
44.6
Minor BPS
45.8
-0.3
2.3
65.67
40.8

Associated Gene:

Gene:
ADAD1
Ensembl Gene ID:
ENSAPLG00000006694
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006952
50165616 - 50177202
11587