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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50176209_50177088_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50176209 - 50177088
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GATTTCAAGACA
Flanking Amino Acid:
LQIATYHKAKIQSKSYQEAK
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
47.2
-0.2
1.9
60.56
39.1

Associated Gene:

Gene:
ADAD1
Ensembl Gene ID:
ENSAPLG00000006694
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006952
50165616 - 50177202
11587