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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_502359_502473_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
502359 - 502473
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTAACTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTTGTTAACT
Flanking Amino Acid:
RAVKSSSVVELDLEGTRIRR
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
73
0.52
0.9
63.6
42.8
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
68.1
0.65
2.1
86.99
39.2

Associated Gene:

Gene:
LARP7
Ensembl Gene ID:
ENSAPLG00000012887
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013441
499617 - 522923
23307