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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50237051_50237498_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50237051 - 50237498
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATAT
Flanking Amino Acid:
KRPILKDSGKQCESTCESYE
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
65.1
0.55
1.6
84.45
36.3

Associated Gene:

Gene:
IL21
Ensembl Gene ID:
ENSAPLG00000006911
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007179
50236922 - 50241656
4735