Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_502558_505372_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

502558 - 505372

Intron Length:

2815

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGGTTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATTAC

U12 Branch Point Sequence:

AATTACTGAGAA

Flanking Amino Acid:

KDVDSRTVYVELLPKNVNHS

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

72.2

39.9

Major BPS

0.42

1.1

38.5

Major PPT

88.3

0.86

0.6

85.2

22.2

Minor 5ss

40.5

-1.1

3.3

52.3

45.8

Minor BPS

46.2

-0.2

1.9

59.14

39.4

Associated Gene:

Gene:

LARP7

Ensembl Gene ID:

ENSAPLG00000012887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013441

499617 - 522923

23307