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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50291047_50291455_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50291047 - 50291455
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
ATTTTCTCAGTT
Flanking Amino Acid:
MASNYRKPGLG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
62
37
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
74.4
0.55
1
75.6
27
Minor 5ss
32.3
-2
3.3
39.1
40.7
Minor BPS
58.3
0.34
1.7
78.32
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006954
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007214
50288702 - 50291458
2757