About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50344252_50344825_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
50344252 - 50344825
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAACACCA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTGTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTTTGTTCACA
Flanking Amino Acid:
ASTFHVPNWFKLQLQAEER
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.2
0.1
1.3
49.1
41.6
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
39.8
-1.1
3.1
50.2
45.6
Minor BPS
55.5
0.17
2.4
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007001
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007267
50344224 - 50351569
7346