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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50352453_50355684_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50352453 - 50355684
Intron Length:
3232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTCTCTTCACCT
Flanking Amino Acid:
GGLANPGEDIGDTAVREVFE
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.7
40.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.3
0.5
0.8
66.2
34.8
Minor 5ss
37.3
-1.4
3
52.6
43.7
Minor BPS
52.7
0.16
1.9
71.32
46.1

Associated Gene:

Gene:
NUDT6
Ensembl Gene ID:
ENSAPLG00000007045
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007305
50352064 - 50364973
12910