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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50355740_50359484_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50355740 - 50359484
Intron Length:
3745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TTTTCCTCCAAT
Flanking Amino Acid:
KVLVVQDRNKTVNAWKFPGG
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
72.1
0.5
0.9
65.8
33.7
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
59.9
0.39
2.1
85.81
40.1

Associated Gene:

Gene:
NUDT6
Ensembl Gene ID:
ENSAPLG00000007045
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007305
50352064 - 50364973
12910