Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50365099_50365993_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

50365099 - 50365993

Intron Length:

895

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGGG

5'SS Class:

major

3'SS Sequence:

AAACGCTTCCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTGCTCTGAAAC

Flanking Amino Acid:

CSAWPGRWRQVCTAWPTTGF

Intron Amino Acid Position:

329

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

60.1

42.1

Major BPS

0.92

0.9

86.2

29.1

Major PPT

57.6

0.17

0.9

47.4

40.4

Minor 5ss

27.2

-2.6

3.7

37.3

47.4

Minor BPS

55.5

0.15

1.6

65.94

39.1

Associated Gene:

Gene:

SPATA5

Ensembl Gene ID:

ENSAPLG00000007122

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007424

50364115 - 50553393

189279