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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50366152_50370631_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50366152 - 50370631
Intron Length:
4480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCTTCCAAT
Flanking Amino Acid:
IQAEEVDVKLRDKDACIKAE
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.8
35.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
72.6
0.51
0.9
65.6
33.6
Minor 5ss
38.6
-1.3
3.1
50.7
46.2
Minor BPS
54
0.21
2.1
81.38
40.3

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279