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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50370691_50371738_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50370691 - 50371738
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAAATT
5'SS Class:
major
3'SS Sequence:
TTTTTTATCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
EMSVCLLRNLDGKVVLPGNL
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
79.6
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.5
0.78
0.7
81.3
29.2
Minor 5ss
44.9
-0.6
3
66.2
44.9
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279