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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50375505_50376375_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50375505 - 50376375
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTACTGAAATTT
Flanking Amino Acid:
LRQIFAEASLRRPSIIFIDE
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
74.5
36.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
49.4
-0
2.4
68.6
42
Minor BPS
31.9
-1.3
2.2
46
40

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279