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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50376500_50377818_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50376500 - 50377818
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGATGTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTAGTTTAATT
Flanking Amino Acid:
LLTLMDGIGSEGSEGQLVVL
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.1
37.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72
0.49
1.1
69.3
45.9
Minor 5ss
37.9
-1.4
2.8
52.3
44.3
Minor BPS
66.1
0.58
1.8
84.21
37.1

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279