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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50378075_50389926_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50378075 - 50389926
Intron Length:
11852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTAATA
Flanking Amino Acid:
ADLAALCKEAGLYALRRALG
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.6
0.67
0.9
77.6
35.5
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
75.5
0.8
1.1
78.11
33

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279