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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50397182_50408160_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50397182 - 50408160
Intron Length:
10979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTAATT
Flanking Amino Acid:
ESGLNFLAVKGPELMNKYVG
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71.6
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.5
0.73
0.9
75.9
37.6
Minor 5ss
32.2
-2
3.4
46.9
48.4
Minor BPS
90.1
1.34
0.7
99.4
21.6

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279