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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50408215_50408610_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50408215 - 50408610
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
AGTGCCTTAAAA
Flanking Amino Acid:
VGESERAVREIFRKARAVSP
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
81
0.7
0.9
73.5
41.9
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
67
0.53
1.5
72.17
39.3

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279