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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50421779_50517023_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50421779 - 50517023
Intron Length:
95245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAATA
5'SS Class:
major
3'SS Sequence:
ATTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTATAACT
Flanking Amino Acid:
ATNRPDMIDKALLRPGRIDR
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.3
36
Major BPS
100
1.24
0.5
100
0
Major PPT
84.5
0.78
0.8
78.7
33.7
Minor 5ss
35.3
-1.7
3.3
48.9
46.9
Minor BPS
63.6
0.5
1.7
83.99
37.1

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279