About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50517189_50553052_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50517189 - 50553052
Intron Length:
35864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATGGTGCAATT
Flanking Amino Acid:
QHTHRYSGAEITAVCREAAL
Intron Amino Acid Position:
1064

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.6
0.89
0.7
84.7
30.1
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
40
-0.6
2.4
60.42
44.1

Associated Gene:

Gene:
SPATA5
Ensembl Gene ID:
ENSAPLG00000007122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007424
50364115 - 50553393
189279