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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_50742872_50844380_F

Intron Information:

Intron Rank:
140568
Intron Class:
major
Intron Phase:
Intron Coordinates:
50742872 - 50844380
Intron Length:
101509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TAATCCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GGTTCTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
70
0.45
1
66
40.2
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
75.7
0.79
1.1
75.81
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025690
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026004
50742772 - 50854190
111419