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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_507956_508367_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
507956 - 508367
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GGATTTTTATTT
Flanking Amino Acid:
ETEEAPKDSNEVPAEDDKNG
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.2
0.86
0.8
86.3
32.1
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
52.9
0.17
1.5
65.61
39.4

Associated Gene:

Gene:
LARP7
Ensembl Gene ID:
ENSAPLG00000012887
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013441
499617 - 522923
23307