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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_508504_510979_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
508504 - 510979
Intron Length:
2476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTAT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTGTTGACA
Flanking Amino Acid:
EEVIPLRVLSKTEWMDLKQE
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77.7
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.7
81.6
35
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
58.4
0.26
2.1
73.41
38.9

Associated Gene:

Gene:
LARP7
Ensembl Gene ID:
ENSAPLG00000012887
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013441
499617 - 522923
23307