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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51068188_51076572_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51068188 - 51076572
Intron Length:
8385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TCTCTTTTGATA
Flanking Amino Acid:
QSKAVTKMFTGFRKISLDDL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
77.5
0.62
0.9
75.8
32.8
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
60.6
0.33
1.2
66.37
34.3

Associated Gene:

Gene:
ANKRD50
Ensembl Gene ID:
ENSAPLG00000007695
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007975
51064640 - 51076777
12138