Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51221498_51222085_R

Intron Information:

Intron Rank:

141924

Intron Class:

major

Intron Phase:

Intron Coordinates:

51221498 - 51222085

Intron Length:

588

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAGTCAC

5'SS Class:

major

3'SS Sequence:

TTTTTTCACCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TTTTTTTCACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

62.5

38.1

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

83.9

0.76

0.8

77.9

35.5

Minor 5ss

31.3

-2.1

2.9

41.2

39.1

Minor BPS

57.6

0.22

1.8

73.67

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023675

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048436

51221242 - 51222319

1078