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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5122415_5123426_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5122415 - 5123426
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTATTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
MARVFMRMKLPGYLMG*
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.1
38.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.9
0.9
0.7
85.2
29.1
Minor 5ss
34.8
-1.7
3.2
48.1
41.4
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
OSTC
Ensembl Gene ID:
ENSAPLG00000021135
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048482
5114764 - 5124079
9316