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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51288767_51288950_F

Intron Information:

Intron Rank:
144982
Intron Class:
major
Intron Phase:
Intron Coordinates:
51288767 - 51288950
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
TTATATACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTATTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.3
0.61
0.9
71.2
39
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
50.2
0.08
1.7
69.01
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041683
51288612 - 51308504
19893
ENSAPLT00000035764
51288612 - 51306107
17496
ENSAPLT00000044290
51288612 - 51293608
4997