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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51289018_51293106_F

Intron Information:

Intron Rank:
144987
Intron Class:
major
Intron Phase:
Intron Coordinates:
51289018 - 51293106
Intron Length:
4089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATGTCTATATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.2
0.75
0.8
77.6
31.2
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
47.9
-0
1.9
68.51
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044290
51288612 - 51293608
4997